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Publications

A full list of publications can be found here.

Macrophage and neutrophil heterogeneity at single-cell spatial resolution in human inflammatory bowel disease

Garrido-trigo A, Corraliza, A, et al. & Mereu E*, Heyn H*, Salas A.

Local IL-17 orchestrates skin aging

Paloma Solà*, Elisabetta Mereu*, Julia Bonjoch, Marta Casado, Oscar Reina, Enrique Blanco, Manel Esteller, Luciano Di Croce, Holger Heyn, Guiomar Solanas, Salvador Aznar Benitah.

Glioblastoma cell fate is differentially regulated by the microenvironments of the tumour bulk and infiltrative margin

Claudia Garcia-Diaz* , Anni Pöysti*, Elisabetta Mereu* , Melanie P. Clements , Felipe Galvez-Cancino , Simon P. Castillo , Lilas Courtot , Sara Ruiz , Federico Roncaroli , Yinyin Yuan , Sergio A. Quezada , Holger Heyn and Simona Parrinello.

Zonation of Ribosomal DNA Transcription Defines a Stem Cell Hierarchy in Colorectal Cancer

Clara Morral, Jelena Stanisavljevic, Xavier Hernando-Momblona, Elisabetta Mereu, Adrián Álvarez-Varela, Carme Cortina, Diana Stork, Felipe Slebe, Gemma Turon, Gavin Whissell, Marta Sevillano, Anna Merlos-Suárez, Àngela Casanova-Martí, Catia Moutinho, Scott W Lowe, Lukas E Dow, Alberto Villanueva, Elena Sancho, Holger Heyn, Eduard Batlle

Benchmarking single-cell RNA-sequencing protocols for cell atlas projects

Elisabetta Mereu*, Atefeh Lafzi*, Catia Moutinho, Christoph Ziegenhain, Davis J McCarthy, Adrián Álvarez-Varela, Eduard Batlle, Dominic Grün, Julia K Lau, Stéphane C Boutet, Chad Sanada, Aik Ooi, Robert C Jones, Kelly Kaihara, Chris Brampton, Yasha Talaga, Yohei Sasagawa, Kaori Tanaka, Tetsutaro Hayashi, Caroline Braeuning, Cornelius Fischer, Sascha Sauer, Timo Trefzer, Christian Conrad, Xian Adiconis, Lan T Nguyen, Aviv Regev, Joshua Z Levin, Swati Parekh, Aleksandar Janjic, Lucas E Wange, Johannes W Bagnoli, Wolfgang Enard, Marta Gut, Rickard Sandberg, Itoshi Nikaido, Ivo Gut, Oliver Stegle, Holger Heyn

Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data

Christian H Holland, Jovan Tanevski, Javier Perales-Patón, Jan Gleixner, Manu P Kumar, Elisabetta Mereu, Brian A Joughin, Oliver Stegle, Douglas A Lauffenburger, Holger Heyn, Bence Szalai, Julio Saez-Rodriguez

matchSCore: matching single-cell phenotypes across tools and experiments

Elisabetta Mereu, Giovanni Iacono, Amy Guillaumet-Adkins, Catia Moutinho, Giulia Lunazzi, Catarina P Santos, Irene Miguel-Escalada, Jorge Ferrer, Francisco X Real, Ivo Gut, Holger Heyn

bigSCale: an analytical framework for big-scale single-cell data

Giovanni Iacono, Elisabetta Mereu, Amy Guillaumet-Adkins, Roser Corominas, Ivon Cuscó, Gustavo Rodríguez-Esteban, Marta Gut, Luis Alberto Pérez-Jurado, Ivo Gut, Holger Heyn

Single-cell transcriptome conservation in cryopreserved cells and tissues

Amy Guillaumet-Adkins*, Gustavo Rodríguez-Esteban*, Elisabetta Mereu*, Maria Mendez-Lago, Diego A Jaitin, Alberto Villanueva, August Vidal, Alex Martinez-Marti, Enriqueta Felip, Ana Vivancos, Hadas Keren-Shaul, Simon Heath, Marta Gut, Ido Amit, Ivo Gut, Holger Heyn

Dual MET and ERBB inhibition overcomes intratumor plasticity in osimertinib-resistant-advanced non-small-cell lung cancer (NSCLC)

Alex Martinez-Marti, Enriqueta Felip, Judit Matito, Elisabetta Mereu, Alejandro Navarro, Susana Cedrés, Núria Pardo, A Martinez de Castro, Jordi Remon, Josep M Miquel, Amy Guillaumet-Adkins, Ernest Nadal, Gustavo Rodriguez-Esteban, Oriol Arqués, Roberta Fasani, Paolo Nuciforo, Holger Heyn, Alberto Villanueva, Héctor G Palmer, A Vivancos

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